PPDB

The Plant Proteome Database

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AT1G29350.1   RNA polymerase II degradation factor-like protein (DUF1296)

Lab Annot. Kinase-related protein of unknown function (DUF1296)
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G29370.1 11Arabidopsis thaliana083198992 (0)_
AT1G29370.2 11Arabidopsis thaliana067998990 (0)_
AT4G18150.1 11Arabidopsis thaliana2E-11282937510 (0)_
Os05g49180.1 7Oryza sativa9E-110896354916 (16)_
Os05g50480.1 7Oryza sativa7E-69833304625 (25)M
Os01g47430.2 7Oryza sativa9E-30198405711 (11)_
Zm00001eb157580_P001 agpv5Zea mays2E-10490734480 (0)_
v1_GRMZM2G125044_P01 4a53Zea mays2E-10490734487 (7)_
GRMZM2G125044_P01 3.21Zea mays2E-104907344811 (11)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF1296(1)
TargetP: Cytoplasm (Class 3 C0.192; M0.207; S0.036; _0.785)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 831 aa (-cTP 791)
Molecular Weight 90.88 kDA(-cTP )
PI 5.51(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

20706207(contaminants cell cycle interactome (cell culture))
19114538(guard cells Arabidopsis leaf)
20733066(phosphoproteome-ABA-leaf)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help