PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G29340.1 plant U-box 17

Lab Annot.

plant U-box 17
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G01830.1 11 Arabidopsis thaliana 5E-121 681 37 54 0 (0) C
AT3G46510.1 11 Arabidopsis thaliana 2E-100 665 34 51 6 (3) _
AT3G54850.1 11 Arabidopsis thaliana 2E-91 668 34 51 0 (0) _
Os02g13960.1 7 Oryza sativa 0 725 44 64 0 (0) C
Os05g39930.1 7 Oryza sativa 2E-116 602 39 55 0 (0) C
Os01g60860.1 7 Oryza sativa 2E-113 631 39 56 0 (0) C
Zm00001eb239050_P001 agpv5 Zea mays 0 638 49 67 0 (0) C
v1_GRMZM2G160370_P01 4a53 Zea mays 0 638 49 67 0 (0) S
GRMZM2G160370_P01 3.21 Zea mays 0 638 49 67 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Arm(5) Arm_2(1) HEAT_2(3) KAP(1) U-box(1) UNC45-central(1) zf-C3HC4_4(1) zf-NOSI
TargetP:	Chloroplast (Class 5 C0.440; M0.310; S0.001; _0.052)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	729 aa (-cTP 726)
Molecular Weight	79.83 kDA(-cTP 79.54)
PI	7.44(-cTP 7.57)

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1478	Detail								leaf [A. thaliana]	co-IP GST-ClpSmut stroma	clpc1 x clps (rep. 5)

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data