PPDB

 The Plant Proteome Database

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AT1G28490.2   syntaxin of plants 61
Lab Annot. syntaxin of plants 61
Mapman: 31.4 cell.vesicle transport
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G28490.3 11Arabidopsis thaliana4E-13920096980 (0)_
AT1G28490.1 11Arabidopsis thaliana2E-136190991002 (2)_
AT1G79590.1 11Arabidopsis thaliana2E-1119028501 (1)_
Os11g06740.1 7Oryza sativa2E-7519061755 (5)_
Os01g73230.1 7Oryza sativa1E-7219058740 (0)_
Os08g17600.3 7Oryza sativa3E-1216928532 (2)_
Zm00001eb140280_P001 agpv5Zea mays3E-7419058740 (0)_
GRMZM2G061446_P01 3.21Zea mays3E-7419058741 (1)_
Zm00001eb400730_P003 agpv5Zea mays4E-7320354730 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: FlaC_arch(3) MCU(1) SlyX(2) SNARE(1) SOAR(2) Syntaxin-6_N(2)
TargetP: Cytoplasm (Class 5 C0.025; M0.460; S0.056; _0.544)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 206 aa (-cTP 142)
Molecular Weight 23.32 kDA(-cTP )
PI 6.21(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1

* For details about the exprimental sources click here.

Published Proteomics Data

 19546170(mature pollen grains)
19334764(plasma membrane (cell culture))
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help