PPDB

 The Plant Proteome Database

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AT1G28490.1   syntaxin of plants 61
Lab Annot. syntaxin of plants 61
Mapman: 31.4 cell.vesicle transport
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G28490.3 11Arabidopsis thaliana5E-137190991000 (0)_
AT1G28490.2 11Arabidopsis thaliana2E-136190991002 (2)_
AT1G79590.1 11Arabidopsis thaliana9E-1324626481 (1)_
Os01g73230.1 7Oryza sativa9E-10724560760 (0)_
Os11g06740.1 7Oryza sativa7E-10524560775 (5)_
Os08g17600.2 7Oryza sativa2E-1225025504 (4)_
Zm00001eb140280_P001 agpv5Zea mays2E-10724560760 (0)_
GRMZM2G061446_P01 3.21Zea mays2E-10724560761 (1)_
Zm00001eb400730_P003 agpv5Zea mays9E-10724559770 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: FlaC_arch(3) MCU(2) NPV_P10(2) SlyX(2) SNARE(1) Syntaxin-6_N(2) Uso1_p115_C(2)
TargetP: Cytoplasm (Class 1 C0.097; M0.052; S0.080; _0.948)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 245 aa (-cTP 234)
Molecular Weight 27.72 kDA(-cTP )
PI 5.11(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1

* For details about the exprimental sources click here.

Published Proteomics Data

 19546170(mature pollen grains)
19334764(plasma membrane (cell culture))
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help