PPDB

 The Plant Proteome Database

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AT1G28290.1   arabinogalactan protein 31
Lab Annot. arabinogalactan protein 3 (AGP31)
Mapman: 20.2.99 stress.abiotic.unspecified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G28290.2 11Arabidopsis thaliana5E-9515910010055 (30)S
AT2G33790.1 11Arabidopsis thaliana4E-6419461730 (0)S
AT2G34700.1 11Arabidopsis thaliana2E-37150496219 (16)S
Os05g45460.1 7Oryza sativa2E-127945630 (0)S
Os01g52660.1 7Oryza sativa5E-128643590 (0)S
Os01g07060.1 7Oryza sativa6E-1214835480 (0)C
Zm00001eb154390_P001 agpv5Zea mays3E-158543620 (0)S
GRMZM2G079883_P01 3.21Zea mays3E-158543620 (0)S
v1_GRMZM2G079883_P01 4a53Zea mays3E-158543620 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Big_1(1) bMG3(1) CarbopepD_reg_2(1) CarboxypepD_reg(1) Pollen_Ole_e_1(1) SdrD_B(
TargetP: Secreted (Class 4 C0.023; M0.038; S0.483; _0.112)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 359 aa (-cTP 348)
Molecular Weight 38.49 kDA(-cTP )
PI 10.18(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
337Detail       bundle sheaths [A. thaliana]Bundle sheath total BS strands wild-type
1113Detail        [A. thaliana] control for RARE-1 co-IP wild-type
1114Detail        [A. thaliana] RARE1 co-IP rare-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1535Detail       leaf [A. thaliana] wild-type
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2237Detail       seedlings [A. thaliana] total tissue gfs9
2238Detail       seedlings [A. thaliana] total tissue gfs9
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

 19200160(flower-stage 12)
18796151(cell wall (hypocotyl))
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
19714877(interactomes 14-3-3 complexes (cell culture))
WallDB-E.Jamet(cell wall reference proteome)
21533090(plasmodesmata-crude)
21173025(root proteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)
21109274(cellwall-glycoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help