PPDB

The Plant Proteome Database

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AT1G28120.1   ubiquitin thioesterase otubain-like protein

Lab Annot. OTU-like cysteine protease (OTU1)
Mapman: 29.5.3.1.5* protein.degradation.cysteine protease.CA.C85
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os08g42540.1 7Oryza sativa2E-13927566832 (2)_
Os08g42540.2 7Oryza sativa3E-10319868860 (0)_
Os04g55840.1 7Oryza sativa2E-1821827510 (0)_
v1_GRMZM2G107289_P02 4a53Zea mays2E-13431261740 (0)_
Zm00001eb175560_P001 agpv5Zea mays2E-13431261740 (0)_
GRMZM2G107289_P02 3.21Zea mays2E-13431261740 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: OTU(1) Peptidase_C65(1)
TargetP: Cytoplasm (Class 2 C0.088; M0.074; S0.244; _0.876)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 306 aa (-cTP 297)
Molecular Weight 34.43 kDA(-cTP )
PI 4.55(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1598Detail        [A. thaliana]  
1600Detail        [A. thaliana]  

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help