PPDB

PPDB	The Plant Proteome Database

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AT1G27980.1 dihydrosphingosine phosphate lyase

Lab Annot.

dihydrosphingosine phosphate lyase
Mapman: 11.8.1 lipid metabolism.exotics (steroids, squalene etc).sphingolipids

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G17330.1 11 Arabidopsis thaliana 6E-21 362 26 44 16 (13) C
AT3G17760.1 11 Arabidopsis thaliana 6E-21 366 25 44 5 (5) _
AT3G17760.2 11 Arabidopsis thaliana 6E-21 366 25 44 1 (1) _
Os01g01080.1 7 Oryza sativa 0 529 70 83 15 (15) _
Os01g01080.3 7 Oryza sativa 0 386 78 89 1 (1) S
Os01g01080.2 7 Oryza sativa 0 386 78 89 1 (1) S
Zm00001eb334070_P001 agpv5 Zea mays 0 565 66 77 0 (0) M
GRMZM2G044337_P01 3.21 Zea mays 0 452 76 85 0 (0) _
v1_GRMZM2G044337_P01 4a53 Zea mays 0 452 76 85 2 (2) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Aminotran_5(1) BBIP10(1) Pyridoxal_deC(1)
TargetP:	Cytoplasm (Class 3 C0.126; M0.046; S0.162; _0.618)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:	2 TMs
TAT position:
Length	544 aa (-cTP 534)
Molecular Weight	59.48 kDA(-cTP )
PI	8.04(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1622	Detail								[A. thaliana]		m48

* For details about the exprimental sources click here.

Published Proteomics Data

16618929(ER-LOPIT-callus)
17432890(leaf total membranes)
21173025(root proteome)

Comparative Proteomics Data