PPDB

PPDB	The Plant Proteome Database

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AT1G27650.1 U2 snRNP auxiliary factor small subunit

Lab Annot.

U2 snRNP auxiliary factor small subunit, putative
Mapman: 27.1.1 RNA.processing.splicing

Curated Location

TAIR curated location: nucleus16407443

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G27650.2 11 Arabidopsis thaliana 2E-179 246 100 100 0 (0) _
AT5G42820.1 11 Arabidopsis thaliana 5E-142 292 78 83 0 (0) _
AT5G42820.2 11 Arabidopsis thaliana 5E-142 292 78 83 0 (0) _
Os09g31482.1 7 Oryza sativa 2E-131 296 66 77 2 (2) _
Os09g31482.3 7 Oryza sativa 2E-131 296 66 77 2 (2) _
Os05g48960.3 7 Oryza sativa 4E-123 185 84 95 2 (2) _
GRMZM2G031827_P05 3.21 Zea mays 2E-140 318 66 75 27 (27) _
GRMZM2G031827_P01 3.21 Zea mays 2E-140 318 66 75 27 (27) _
GRMZM2G031827_P04 3.21 Zea mays 2E-140 318 66 75 27 (27) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	RRM_1(1) Torus(2) zf-CCCH(2) zf-CCCH_3(2) zf-CCCH_4(2) zf_CCCH_4(2)
TargetP:	Cytoplasm (Class 3 C0.332; M0.135; S0.026; _0.767)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	296 aa (-cTP 248)
Molecular Weight	34.57 kDA(-cTP )
PI	9.48(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

19334764(plasma membrane (cell culture))
19376835(leaf phosphoproteins)
21173025(root proteome)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data