PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G27540.1   F-box protein (DUF295)

Lab Annot. unknown function (DUF295)
Mapman: 29.5.11.4.3.2 protein.degradation.ubiquitin.E3.SCF.FBOX
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G27540.3 11Arabidopsis thaliana04131001000 (0)C
AT1G27540.2 11Arabidopsis thaliana03811001001 (1)_
AT1G27580.1 11Arabidopsis thaliana038187910 (0)M
Os01g22480.1 7Oryza sativa8E-0635022380 (0)_
Os01g22480.2 7Oryza sativa8E-0635022380 (0)_
Os11g37060.1 7Oryza sativa8E-0635622370 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF295(1)
TargetP: Chloroplast (Class 4 C0.546; M0.108; S0.037; _0.311)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 413 aa (-cTP 384)
Molecular Weight 47.82 kDA(-cTP 44.61)
PI 6.10(-cTP 5.99)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1494Detail       leaf [A. thaliana]  

* For details about the exprimental sources click here.

Published Proteomics Data

19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help