PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G27510.1   UvrB/UvrC domain protein (DUF3506)
Lab Annot. Executer 2 (EXE2)
Mapman: 30.15* signalling.ROS
Curated Location thylakoid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G33630.2 11Arabidopsis thaliana5E-1125973856222 (48)C
AT4G33630.1 11Arabidopsis thaliana5E-1125973856222 (48)C
AT4G33630.3 11Arabidopsis thaliana5E-11259738560 (0)C
Os01g01790.1 7Oryza sativa6E-18058248678 (8)C
Os01g01790.2 7Oryza sativa1E-16254947660 (0)C
Os10g34400.1 7Oryza sativa4E-8161632500 (0)C
GRMZM2G080937_P01 3.21Zea mays1E-17658647689 (9)C
Zm00001eb334320_P002 agpv5Zea mays1E-17658647680 (0)C
v1_GRMZM2G080937_P01 4a53Zea mays1E-17658647688 (8)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF3506(2) UVR(2) YqaH(1)
TargetP: Chloroplast (Class 1 C0.948; M0.037; S0.020; _0.019)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 651 aa (-cTP 582) (-lTP 509)
Molecular Weight 72.13 kDA(-cTP 64.62)(-lTP 56.37)
PI 4.95(-cTP 4.76)(-lTP 4.991)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1384Detail        [A. thaliana] chloroplast fractionation  
1385Detail        [A. thaliana] chloroplast fractionation  
1386Detail        [A. thaliana] chloroplast fractionation  
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1465Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 1)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
2263Detail       leaf [A. thaliana] stroma Clp Clp C1 trap
2267Detail       leaf [A. thaliana] stroma Clp Clp C1 TRAP
2285Detail        [A. thaliana] Clp C1 TRAP
2289Detail        [A. thaliana] Clp C1 TRAP
2290Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2305Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help