PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G26460.1 Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot.

Pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein

Curated Location

TAIR curated location: mitochondrion14671022

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G53700.1 11 Arabidopsis thaliana 7E-15 440 22 44 59 (51) C
AT1G63130.1 11 Arabidopsis thaliana 1E-14 481 22 40 0 (0) M
AT1G63130.2 11 Arabidopsis thaliana 1E-14 481 22 40 0 (0) M
Os07g40800.1 7 Oryza sativa 0 559 56 73 8 (8) M
Os07g14530.3 7 Oryza sativa 3E-17 502 22 39 0 (0) C
Os07g14530.2 7 Oryza sativa 3E-17 502 22 39 0 (0) C
Zm00001eb326730_P002 agpv5 Zea mays 0 600 53 72 0 (0) M
GRMZM2G044023_P01 3.21 Zea mays 0 600 53 72 3 (3) M
v1_GRMZM2G044023_P01 4a53 Zea mays 0 600 53 72 8 (8) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CCDC106(1) Ferritin(2) MSA-2c(3) PPR(6) PPR_1(5) PPR_2(7) PPR_3(6) PPR_long(4) T
TargetP:	Mitochondria (Class 4 C0.205; M0.543; S0.008; _0.096)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	630 aa (-cTP 601)
Molecular Weight	70.23 kDA(-cTP )
PI	5.91(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1402	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
2009	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2269	Detail								seedlings [A. thaliana]	total tissue	wild-type
2288	Detail								[A. thaliana]		Clp C1 WT
2290	Detail								[A. thaliana]		Clp C1 TRAP
2298	Detail								[A. thaliana]		Clp C1 WT
2300	Detail								[A. thaliana]		Clp C1 TRAP
2302	Detail								[A. thaliana]		Clp C1 WT
2306	Detail								[A. thaliana]		Clp C1 TRAP
2315	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane
2320	Detail								[A. thaliana]	Thylakoids plastoglobule
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

MitoDB(Mitochondrial proteome)
19525416(leaf (wt and clpr4-1 mutant))
21311031(mitochondria)
21166475(cytosolic-fractions-crude)
21841088(mitochondria (2DE native gel))
21173025(root proteome)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data