PPDB

The Plant Proteome Database

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AT1G25540.1   phytochrome and flowering time regulatory protein (PFT1)

Lab Annot. PFT1 (PHYTOCHROME AND FLOWERING TIME 1)
Mapman: 30.11 signalling.light
Curated Location
TAIR curated location: nucleus12815435
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G25540.2 11Arabidopsis thaliana07271001005 (5)C
Os09g13610.1 7Oryza sativa070350640 (0)_
Os09g13610.3 7Oryza sativa4E-13560344590 (0)_
Zm00001eb097890_P003 agpv5Zea mays070051680 (0)_
v1_GRMZM2G138178_P02 4a53Zea mays070051681 (1)_
GRMZM2G138178_P02 3.21Zea mays070051681 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF572(1) Exonuc_VII_L(1) Med25_VWA(1)
TargetP: Cytoplasm (Class 5 C0.081; M0.075; S0.425; _0.503)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 836 aa (-cTP 825)
Molecular Weight 89.57 kDA(-cTP )
PI 8.51(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1202Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)
20813957(SUMO proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help