PPDB

 The Plant Proteome Database

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AT1G25520.1   Uncharacterized protein family (UPF0016)
Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G68650.1 11Arabidopsis thaliana4E-13423088910 (0)_
AT5G36290.2 11Arabidopsis thaliana2E-5222243590 (0)S
AT5G36290.1 11Arabidopsis thaliana2E-5222243590 (0)S
Os08g33630.1 7Oryza sativa2E-11422776866 (6)_
Os08g33630.2 7Oryza sativa5E-8918376850 (0)_
Os11g28300.1 7Oryza sativa9E-5321445610 (0)S
Zm00001eb179600_P006 agpv5Zea mays2E-11422675870 (0)S
v1_GRMZM2G160560_P02 4a53Zea mays3E-11422777860 (0)_
Zm00001eb041600_P002 agpv5Zea mays3E-11422777860 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF1673(2) DUF21(2) Mntp(2) UPF0016(2)
TargetP: Cytoplasm (Class 5 C0.027; M0.035; S0.412; _0.538)
Predotar:
Subcel. Location:
TM-HMM prediction: 5 TMs
Aramemnon: 5 TMs
TAT position:
Length 230 aa (-cTP 175)
Molecular Weight 24.81 kDA(-cTP )
PI 6.15(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1348Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 1)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1446Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 2)
1611Detail       leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1612Detail       Natural Senescence leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1614Detail       Natural Senescence leaf [A. thaliana]  
1615Detail       Natural Senescence leaf [A. thaliana]  
1616Detail       Natural Senescence leaf [A. thaliana]  
1617Detail        [A. thaliana] m48
1618Detail        [A. thaliana] m48
1619Detail        [A. thaliana] m48
1620Detail        [A. thaliana] m48
1621Detail        [A. thaliana] m48
1622Detail        [A. thaliana] m48

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help