PPDB

PPDB	The Plant Proteome Database

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AT1G25450.1 3-ketoacyl-CoA synthase 5

Lab Annot.

Mapman: 16.7 secondary metabolism.wax

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G68530.1 11 Arabidopsis thaliana 0 492 88 95 14 (8) _
AT2G16280.1 11 Arabidopsis thaliana 0 484 62 79 0 (0) _
AT1G19440.1 11 Arabidopsis thaliana 0 484 61 80 0 (0) _
Os03g12030.1 7 Oryza sativa 0 491 76 88 21 (21) M
Os05g49290.2 7 Oryza sativa 0 485 62 80 0 (0) _
Os05g49290.3 7 Oryza sativa 0 485 62 80 0 (0) _
Zm00001eb008920_P001 agpv5 Zea mays 0 489 75 88 0 (0) _
v1_GRMZM2G164974_P01 4a53 Zea mays 0 489 75 88 8 (8) _
GRMZM2G164974_P01 3.21 Zea mays 0 489 75 88 13 (13) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ACP_syn_III(1) ACP_syn_III_C(2) Chal_sti_synt_C(1) Chal_sti_synt_N(1) FAE1_CUT1_
TargetP:	Secreted (Class 4 C0.002; M0.105; S0.723; _0.382)
Predotar:
Subcel. Location:
TM-HMM prediction:	3 TMs
Aramemnon:	3 TMs
TAT position:
Length	492 aa (-cTP 460)
Molecular Weight	55.65 kDA(-cTP )
PI	9.01(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2245	Detail								seedlings [A. thaliana]	total tissue	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

17432890(leaf total membranes)
19334764(plasma membrane (cell culture))
19292762(Ubiquitin-affinity seedling (10 d))

Comparative Proteomics Data