PPDB

 The Plant Proteome Database

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AT1G24610.1   Rubisco methyltransferase family protein
Lab Annot. SET domain protein (related to Rubisco methyltransferase)
Mapman: 35.1.13 not assigned.no ontology.SET domain-containing protein
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G14030.1 11Arabidopsis thaliana3E-114522341126 (49)C
AT4G20130.1 11Arabidopsis thaliana1E-09371223876 (36)C
AT4G20130.2 11Arabidopsis thaliana2E-0937122380 (0)_
Os02g50100.1 7Oryza sativa0444607516 (16)C
Os12g13460.1 7Oryza sativa1E-11358234326 (26)C
Os05g50980.1 7Oryza sativa8E-10361233721 (21)C
Zm00001eb190260_P001 agpv5Zea mays046158750 (0)C
v1_GRMZM2G063316_P01 4a53Zea mays046158750 (0)C
GRMZM2G063316_P01 3.21Zea mays0461587525 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Rubis-subs-bind(1) SET(1)
TargetP: Chloroplast (Class 5 C0.124; M0.114; S0.106; _0.041)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon: 1 TMs
TAT position: 104
Length 476 aa (-cTP 455) (-lTP 350)
Molecular Weight 52.59 kDA(-cTP 50.37)(-lTP 38.90)
PI 5.83(-cTP 5.64)(-lTP 5.304)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2297Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19888209(leaves)
19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help