PPDB

The Plant Proteome Database

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AT1G24460.1   TGN-related%2C localized SYP41 interacting protein

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G24460.2 11Arabidopsis thaliana0180795959 (5)_
AT4G31570.6 11Arabidopsis thaliana1E-2229429490 (0)_
AT4G31570.3 11Arabidopsis thaliana2E-2229429490 (0)_
Os02g38480.1 7Oryza sativa2E-165175329486 (6)C
Os02g05490.1 7Oryza sativa2E-2130131500 (0)_
Zm00001eb246290_P001 agpv5Zea mays1E-144175728480 (0)C
AC205703.4_FGP010 3.21Zea mays2E-79106828480 (0)C
v1_AC205703.4_FGP010 4a53Zea mays2E-79106828480 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ERM(5) G-gamma(2) Golgin_A5(8) MtrB(3) TPR_MLP1_2(9)
TargetP: Cytoplasm (Class 2 C0.147; M0.110; S0.126; _0.900)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1807 aa (-cTP 1784)
Molecular Weight 202.12 kDA(-cTP )
PI 4.58(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19546170(mature pollen grains)
19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)
21433285(Crude microsomes cell_cultures)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help