PPDB

The Plant Proteome Database

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AT1G24310.1   nuclear pore complex protein

Lab Annot. Nucleoporin Nup54
Mapman: 29.3.1 protein.targeting.nucleus
Curated Location nucleus (Pubmed: 21189294 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os07g19494.1 7Oryza sativa1E-15038957730 (0)C
GRMZM2G104258_P01 3.21Zea mays1E-15140058721 (1)C
Zm00001eb305390_P001 agpv5Zea mays1E-15140058720 (0)C
v1_GRMZM2G104258_P02 4a53Zea mays1E-151400587217 (17)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Nup54(1) Spt20(1)
TargetP: Chloroplast (Class 2 C0.930; M0.040; S0.007; _0.182)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 377 aa (-cTP 318)
Molecular Weight 41.82 kDA(-cTP 36.15)
PI 6.25(-cTP 6.24)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))
21515685(GreenCut2)

Comparative Proteomics Data


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