PPDB

PPDB	The Plant Proteome Database

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AT1G23980.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G40250.1 11 Arabidopsis thaliana 1E-100 310 56 65 0 (0) _
AT3G48030.2 11 Arabidopsis thaliana 1E-53 277 43 57 0 (0) _
AT3G48030.1 11 Arabidopsis thaliana 2E-53 286 43 56 2 (2) _
Os02g50930.1 7 Oryza sativa 1E-91 329 51 63 0 (0) M
Os06g12680.1 7 Oryza sativa 3E-81 346 49 59 0 (0) _
Os06g07100.2 7 Oryza sativa 4E-63 338 42 55 0 (0) _
Zm00001eb254330_P001 agpv5 Zea mays 3E-93 320 53 64 0 (0) M
v1_GRMZM2G053303_P01 4a53 Zea mays 3E-93 320 53 64 0 (0) M
GRMZM2G053303_P01 3.21 Zea mays 3E-93 320 53 64 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Cadherin_C_2(1) DUF4834(1) FANCL_C(1) Peptidase_M56(1) Prok-RING_1(2) Prok-RING_
TargetP:	Chloroplast (Class 3 C0.621; M0.106; S0.005; _0.121)
Predotar:
Subcel. Location:	Transmembrane
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	369 aa (-cTP 329)
Molecular Weight	40.76 kDA(-cTP 36.33)
PI	7.55(-cTP 7.51)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data