PPDB

PPDB	The Plant Proteome Database

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AT1G23900.1 gamma-adaptin 1

Lab Annot.

GAMMA-ADAPTIN 1; clathrin binding
Mapman: 31.4 cell.vesicle transport

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G23900.2 11 Arabidopsis thaliana 0 876 100 100 103 (26) M
AT1G23900.3 11 Arabidopsis thaliana 0 864 100 100 0 (0) _
AT1G60070.1 11 Arabidopsis thaliana 0 876 74 85 31 (9) M
Os06g07090.1 7 Oryza sativa 0 886 68 81 34 (34) _
Os06g07090.2 7 Oryza sativa 0 886 68 81 34 (34) _
Os02g56110.1 7 Oryza sativa 0 901 61 75 18 (18) _
GRMZM2G017421_P02 3.21 Zea mays 0 888 67 80 36 (6) _
GRMZM2G017421_P01 3.21 Zea mays 0 888 67 80 36 (6) _
Zm00001eb271590_P003 agpv5 Zea mays 0 888 67 80 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Adaptin_N(1) Alpha_adaptinC2(1) Arm(4) Cnd1(3) HEAT(2) HEAT_2(3) Nipped-B_C(2) T
TargetP:	Mitochondria (Class 5 C0.050; M0.598; S0.068; _0.472)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	876 aa (-cTP 854)
Molecular Weight	96.47 kDA(-cTP )
PI	5.46(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
1346	Detail								leaf [A. thaliana]	total tissue (5 day HL)	wild-type (rep. 2)
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1421	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1422	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1423	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 3)
1425	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 2)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1439	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 1)
1443	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 2)
1531	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	wild-type (rep. 1)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
2246	Detail								seedlings [A. thaliana]	total tissue	gfs9
2250	Detail								seedlings [A. thaliana]	total tissue	atg5
2253	Detail								seedlings [A. thaliana]	total tissue	atg5
2289	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2297	Detail								[A. thaliana]		Clp C1 WT
2302	Detail								[A. thaliana]		Clp C1 WT
2303	Detail								[A. thaliana]		Clp C1 WT
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21173025(root proteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data