PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G23460.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G23460.2 11 Arabidopsis thaliana 0 436 100 100 0 (0) _
AT1G70500.1 11 Arabidopsis thaliana 0 468 73 84 0 (0) S
AT1G80170.1 11 Arabidopsis thaliana 1E-121 406 45 64 2 (0) S
Os02g03750.1 7 Oryza sativa 1E-161 397 55 72 0 (0) M
Os05g46510.1 7 Oryza sativa 1E-121 392 45 62 0 (0) S
Os07g10740.1 7 Oryza sativa 6E-110 395 44 61 0 (0) S
Zm00001eb231160_P001 agpv5 Zea mays 3E-167 387 58 74 0 (0) S
GRMZM5G831200_P01 3.21 Zea mays 3E-167 387 58 74 0 (0) S
Zm00001eb231160_P002 agpv5 Zea mays 6E-153 390 55 70 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(1) DUF2284(1) End_N_terminal(1) Glyco_hydro_28(1) NosD(2) Pectate_lya
TargetP:	Secreted (Class 1 C0.008; M0.030; S0.986; _0.050)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	460 aa (-cTP 372)
Molecular Weight	49.57 kDA(-cTP )
PI	5.10(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

21173025(root proteome)

Comparative Proteomics Data