PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G23440.1   Peptidase C15%2C pyroglutamyl peptidase I-like protein

Lab Annot. pyroglutamyl peptidase (PGP1)
Mapman: 29.5.3.4.1* protein.degradation.cysteine protease.CF.C15
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G23440.3 11Arabidopsis thaliana4E-1622171001000 (0)_
AT1G56700.1 11Arabidopsis thaliana1E-101218627822 (15)_
AT1G56700.4 11Arabidopsis thaliana1E-10121862780 (0)_
Os09g23280.1 7Oryza sativa4E-10721666800 (0)_
Os07g44610.1 7Oryza sativa1E-10621666805 (5)_
Os07g44610.2 7Oryza sativa1E-10621666805 (5)_
Zm00001eb328970_P003 agpv5Zea mays4E-10521666790 (0)_
GRMZM2G104443_P01 3.21Zea mays4E-105216667927 (24)_
GRMZM2G104443_P02 3.21Zea mays4E-105216667927 (24)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Peptidase_C15(1)
TargetP: Cytoplasm (Class 2 C0.140; M0.084; S0.065; _0.852)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 217 aa (-cTP 194)
Molecular Weight 23.62 kDA(-cTP )
PI 6.60(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1345Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
2003Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2250Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
22060019(phosphoproteome - N-starved seedlings)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help