PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G23400.1   RNA-binding CRS1 / YhbY (CRM) domain-containing protein
Lab Annot. CAF2 - splice factor group II intron
Mapman: 27.1.1 RNA.processing.splicing
Curated Location plastid (Pubmed: 23198870 17071648 18431481 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G20020.1 11Arabidopsis thaliana6E-144369557333 (25)C
AT4G31010.1 11Arabidopsis thaliana4E-8331344620 (0)M
AT4G31010.2 11Arabidopsis thaliana6E-8232043620 (0)M
Os01g21990.1 7Oryza sativa6E-17758149632 (2)C
Os01g31110.1 7Oryza sativa1E-14531962781 (1)C
Os08g07790.1 7Oryza sativa1E-8831648600 (0)M
Zm00001eb130860_P001 agpv5Zea mays059447640 (0)C
AC199526.5_FGP003 3.21Zea mays0594476434 (34)C
Zm00001eb130860_P003 agpv5Zea mays3E-17859447640 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CRS1_YhbY(2)
TargetP: Chloroplast (Class 2 C0.818; M0.036; S0.100; _0.135)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 564 aa (-cTP 521)
Molecular Weight 63.60 kDA(-cTP 59.11)
PI 8.54(-cTP 8.42)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help