PPDB

 The Plant Proteome Database

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AT1G22850.1   SNARE associated Golgi protein family
Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G22850.2 11Arabidopsis thaliana0293991000 (0)C
AT1G03260.1 11Arabidopsis thaliana5E-2215535560 (0)S
AT5G19070.1 11Arabidopsis thaliana4E-1820834560 (0)S
Os01g66170.1 7Oryza sativa9E-129241819014 (14)C
Os07g46220.1 7Oryza sativa2E-1715340560 (0)S
Os03g25750.1 7Oryza sativa1E-1319527480 (0)_
Zm00001eb145530_P002 agpv5Zea mays5E-13034664720 (0)C
GRMZM2G011479_P01 3.21Zea mays5E-130346647222 (22)C
v1_GRMZM2G011479_P01 4a53Zea mays5E-130346647225 (25)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: SNARE_assoc(2)
TargetP: Chloroplast (Class 2 C0.934; M0.287; S0.004; _0.010)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 5 TMs
Aramemnon: 5 TMs
TAT position:
Length 344 aa (-cTP 253)
Molecular Weight 36.90 kDA(-cTP 26.58)
PI 8.79(-cTP 4.81)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
343Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
738Detail        [A. thaliana]  
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
1830Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
1831Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Normal light
1833Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
2133Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
18436743(specific to leaves)
19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help