PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G22760.1 poly(A) binding protein 3

Lab Annot.

Mapman: 27.1 RNA.processing

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G71770.1 11 Arabidopsis thaliana 0 674 72 81 0 (0) _
AT1G71770.2 11 Arabidopsis thaliana 0 674 72 81 0 (0) _
AT4G34110.1 11 Arabidopsis thaliana 0 640 53 66 352 (138) _
Os09g02700.1 7 Oryza sativa 0 614 56 70 51 (51) C
Os08g22354.1 7 Oryza sativa 0 638 54 68 34 (34) _
Os08g22354.2 7 Oryza sativa 0 638 54 68 34 (34) S
GRMZM2G102829_P02 3.21 Zea mays 0 611 56 70 171 (98) _
Zm00001eb308000_P002 agpv5 Zea mays 0 603 54 68 0 (0) C
Zm00001eb308000_P003 agpv5 Zea mays 0 603 54 68 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Nup35_RRM(3) Nup35_RRM_2(4) OB_RNB(3) PABP(1) PHM7_cyt(3) RRM_1(4) RRM_3(4) RRM_
TargetP:	Cytoplasm (Class 5 C0.381; M0.102; S0.149; _0.396)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	660 aa (-cTP 619)
Molecular Weight	72.87 kDA(-cTP )
PI	8.75(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1348	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 1)
1450	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
2243	Detail								seedlings [A. thaliana]	total tissue	gfs9
2257	Detail								leaf [A. thaliana]	total seedlings	gfs9
2258	Detail								leaf [A. thaliana]	total seedlings	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)

Comparative Proteomics Data