PPDB

PPDB	The Plant Proteome Database

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AT1G22510.1 E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232)

Lab Annot.

RING/U-box protein with DUF 1232
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G22510.2 11 Arabidopsis thaliana 1E-108 155 100 100 4 (4) M
AT1G72175.1 11 Arabidopsis thaliana 5E-107 185 87 95 0 (0) _
AT1G72175.2 11 Arabidopsis thaliana 1E-79 151 88 95 0 (0) M
Os03g62250.1 7 Oryza sativa 8E-60 154 57 77 0 (0) M
GRMZM2G170137_P01 3.21 Zea mays 2E-75 182 56 75 0 (0) _
v1_GRMZM2G170137_P04 4a53 Zea mays 5E-28 94 46 68 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF1232(1) zf-ANAPC11(1) zf-C3HC4(1) zf-C3HC4_2(1) zf-C3HC4_3(1) zf-C3HC4_4(1) z
TargetP:	Chloroplast (Class 5 C0.665; M0.011; S0.015; _0.645)
Predotar:
Subcel. Location:	Transmembrane
TM-HMM prediction:	2 TMs
Aramemnon:	2 TMs
TAT position:
Length	185 aa (-cTP 123)
Molecular Weight	20.78 kDA(-cTP 13.83)
PI	8.08(-cTP 6.33)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1440	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 2)
1444	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

17151019(vacuole - suspension cell)
17644812(plasma membrane - suspension cells)
19546170(mature pollen grains)
19334764(plasma membrane (cell culture))

Comparative Proteomics Data