PPDB

 The Plant Proteome Database

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AT1G21880.1   lysm domain GPI-anchored protein 1 precursor
Lab Annot. unknown function (LysM domain)
Mapman: 35.1 not assigned.no ontology
Curated Location plasma membrane (Pubmed: 12068095 12805588 )

TAIR curated location: anchored to membrane12068095,12805588
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G21880.2 11Arabidopsis thaliana031610010062 (59)S
AT1G77630.1 11Arabidopsis thaliana031579893 (1)S
AT2G17120.1 11Arabidopsis thaliana7E-31304305043 (30)S
Os06g10660.1 7Oryza sativa7E-12929162769 (9)S
Os02g53000.1 7Oryza sativa1E-12230159741 (1)S
Os09g27890.1 7Oryza sativa7E-10828952710 (0)S
Zm00001eb278940_P001 agpv5Zea mays6E-11929460760 (0)S
v1_GRMZM2G154301_P01 4a53Zea mays8E-11929259730 (0)S
Zm00001eb256190_P002 agpv5Zea mays8E-11929259730 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: LysM(3)
TargetP: Secreted (Class 1 C0.018; M0.011; S0.968; _0.068)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 316 aa (-cTP 292)
Molecular Weight 33.40 kDA(-cTP )
PI 4.79(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
337Detail       bundle sheaths [A. thaliana]Bundle sheath total BS strands wild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1207Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1392Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1423Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1541Detail       leaf [A. thaliana] Thylakoids plastoglobuleM-48
1596Detail        [A. thaliana]  
1597Detail        [A. thaliana]  
2003Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2208Detail       leaf [A. thaliana] total leaf tissue Clp P5 strepII
2216Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2251Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 12805588(GBI-anchored-callus)
17644812(plasma membrane - suspension cells)
19036721(sterol dependent detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19525416(leaf (wt and clpr4-1 mutant))
19888209(leaves)
WallDB-E.Jamet(cell wall reference proteome)
21693672(wound-regulated leaf proteome (AOS mutant))
21173025(root proteome)
21413152(Xylem-sap (BrassicaOleracea))
21109274(cellwall-glycoproteome)

Comparative Proteomics Data

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