PPDB

 The Plant Proteome Database

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AT1G21700.1   SWITCH/sucrose nonfermenting 3C
Lab Annot. ATSWI3C (switching protein 3C); DNA binding
Mapman: 27.3.44 RNA.regulation of transcription.Chromatin Remodeling Factors
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G34430.3 11Arabidopsis thaliana5E-3829037524 (0)C
AT4G34430.4 11Arabidopsis thaliana5E-3828837524 (0)C
AT4G34430.2 11Arabidopsis thaliana5E-3828837524 (0)C
Os11g08080.1 7Oryza sativa078146600 (0)M
Os11g08080.2 7Oryza sativa9E-17463046610 (0)M
Os12g07730.1 7Oryza sativa5E-17063946610 (0)_
v1_GRMZM2G139760_P01 4a53Zea mays077945584 (4)M
GRMZM2G139760_P01 3.21Zea mays077945580 (0)M
Zm00001eb201260_P002 agpv5Zea mays077945580 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: FTZ(1) Myb_DNA-bind_6(1) Myb_DNA-binding(1) OEP(1) SANT_DAMP1_like(1) SWIRM(1) S
TargetP: Cytoplasm (Class 3 C0.110; M0.237; S0.049; _0.744)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 807 aa (-cTP 787)
Molecular Weight 88.25 kDA(-cTP )
PI 5.15(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1619Detail        [A. thaliana] m48
1620Detail        [A. thaliana] m48
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
20813957(SUMO proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help