PPDB

 The Plant Proteome Database

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AT1G21630.1   Calcium-binding EF hand family protein
Lab Annot. Calcium-binding EF hand protein
Mapman: 30.3 signalling.calcium
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G21630.2 11Arabidopsis thaliana01248979721 (15)_
AT1G21630.3 11Arabidopsis thaliana0121898980 (0)_
AT1G21630.4 11Arabidopsis thaliana0124895950 (0)_
Os06g51250.1 7Oryza sativa01295405430 (30)_
Os03g03830.1 7Oryza sativa01045385219 (19)_
Os06g47330.2 7Oryza sativa3E-148047680 (0)_
Zm00001eb002430_P005 agpv5Zea mays0101439540 (0)_
GRMZM2G118309_P01 3.21Zea mays078544572 (2)_
Zm00001eb278770_P001 agpv5Zea mays0129341550 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: EF-hand_1(4) EF-hand_4(2) EF-hand_5(2) EF-hand_6(4) EF-hand_7(2) EF-hand_8(4) MC
TargetP: Cytoplasm (Class 3 C0.052; M0.341; S0.039; _0.809)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1218 aa (-cTP 1142)
Molecular Weight 131.85 kDA(-cTP )
PI 5.39(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1576Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1577Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1578Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1580Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1633Detail       leaf [A. thaliana] Stroma stromawild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2247Detail       seedlings [A. thaliana] total tissue atg5
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2253Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

 17317660(Plasma Membrane proteome)
18463617(suspension cells-phosphorylated proteins)
19546170(mature pollen grains)
19036721(sterol dependent detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19260003(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19376835(leaf phosphoproteins)
21693672(wound-regulated leaf proteome (wt))
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help