PPDB

 The Plant Proteome Database

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AT1G21600.1   plastid transcriptionally active 6
Lab Annot. unknown protein (pTAC6)
Mapman: 28.3* DNA.plastid nucleoid interacting
Curated Location plastid nucleoid (Pubmed: 23198870 16326926 18431481 )

TAIR curated location: plastid chromosome16326926
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G21600.2 11Arabidopsis thaliana032810010042 (23)C
Os11g01890.1 7Oryza sativa2E-11625668820 (0)C
Os12g01950.1 7Oryza sativa7E-11325766800 (0)_
Os11g01890.2 7Oryza sativa2E-9421968810 (0)C
v1_GRMZM2G440746_P01 4a53Zea mays1E-111257658138 (38)C
Zm00001eb195160_P001 agpv5Zea mays1E-11125765812 (2)C
GRMZM5G829928_P02 3.21Zea mays1E-111257658160 (54)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: PHB_acc_N(1)
TargetP: Chloroplast (Class 2 C0.802; M0.173; S0.196; _0.035)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 328 aa (-cTP 269)
Molecular Weight 37.38 kDA(-cTP 31.11)
PI 4.82(-cTP 4.63)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
622Detail       leaf [A. thaliana] total leaf tissue wild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1196Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1197Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1633Detail       leaf [A. thaliana] Stroma stromawild-type
1634Detail       leaf [A. thaliana] Stroma stromawild-type
1635Detail       leaf [A. thaliana] Stroma stromaclpt1-2
1636Detail       leaf [A. thaliana] Stroma stromaclpt1-2
1637Detail       leaf [A. thaliana] total leaf tissue stromaWild-type
1638Detail       leaf [A. thaliana] total leaf tissue stromaWild-type
1639Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
1640Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
2255Detail       leaf [A. thaliana] total seedlings gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

 15028209(Total chloroplast)
16326926(nucleoids)
19888209(leaves)
19995723(chloroplast reference proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help