PPDB

The Plant Proteome Database

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AT1G20970.1   calponin-like domain protein

Lab Annot. unknown protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G27500.1 11Arabidopsis thaliana6E-23464234891 (81)_
AT4G27500.2 11Arabidopsis thaliana2E-1850624490 (0)_
Os08g40250.1 7Oryza sativa4E-93599375718 (18)_
Os08g30060.1 7Oryza sativa8E-25462254517 (17)_
Os08g30060.2 7Oryza sativa8E-25462254517 (17)_
Zm00001eb316990_P004 agpv5Zea mays7E-8157936570 (0)_
GRMZM2G101711_P02 3.21Zea mays7E-8157936572 (2)_
Zm00001eb316990_P002 agpv5Zea mays7E-8157936570 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: SNARE(2)
TargetP: Cytoplasm (Class 2 C0.120; M0.123; S0.132; _0.869)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 1364 aa (-cTP 1334)
Molecular Weight 150.16 kDA(-cTP )
PI 4.66(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1596Detail        [A. thaliana]  
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

15539469(vacuole)
17317660(Plasma Membrane proteome)
18463617(suspension cells-phosphorylated proteins)
19546170(mature pollen grains)
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help