PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G20880.1   RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot. RNA-binding (RRM/RBD/RNP motifs) protein
Mapman: 27.4 RNA.RNA binding
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G20880.3 11Arabidopsis thaliana02741001000 (0)_
AT1G20880.2 11Arabidopsis thaliana02741001000 (0)_
AT1G76460.1 11Arabidopsis thaliana3E-15028376831 (1)_
Os06g41790.1 7Oryza sativa1E-7727352650 (0)_
Os02g48340.3 7Oryza sativa4E-7727150650 (0)C
Os02g48340.5 7Oryza sativa4E-7727150650 (0)C
GRMZM2G092493_P02 3.21Zea mays9E-8027352630 (0)_
v1_GRMZM2G092493_P02 4a53Zea mays9E-8027352630 (0)_
Zm00001eb388030_P002 agpv5Zea mays9E-8027352630 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Nup35_RRM(1) Nup35_RRM_2(1) RRM_1(1) RRM_7(1)
TargetP: Cytoplasm (Class 3 C0.197; M0.122; S0.105; _0.628)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 274 aa (-cTP 246)
Molecular Weight 29.90 kDA(-cTP )
PI 8.93(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help