PPDB

The Plant Proteome Database

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AT1G20693.1   high mobility group B2

Lab Annot. high mobility group protein beta1 (HMGbeta1)
Mapman: 27.3.62 RNA.regulation of transcription.Nucleosome/chromatin assembly factor group
Curated Location
TAIR curated location: chromatin12653554
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G20693.3 11Arabidopsis thaliana2E-95143991009 (8)C
AT1G20693.2 11Arabidopsis thaliana4E-94142981008 (7)C
AT1G20696.1 11Arabidopsis thaliana5E-72128879312 (12)C
Os09g37910.2 6Oryza sativa1E-3913054682 (2)_
Os09g37910.3 6Oryza sativa1E-3913054682 (2)_
Os09g37910.1 7Oryza sativa2E-3913054684 (4)_
GRMZM2G066528_P02 3.21Zea mays1E-3913255684 (4)_
Zm00001eb320870_P001 agpv5Zea mays1E-3913255680 (0)_
v1_GRMZM2G066528_P02 4a53Zea mays1E-3913255684 (4)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF236(1) DUF4337(1) HMG_box(1) HMG_box_2(1) NOA36(1) PH_4(1)
TargetP: Chloroplast (Class 4 C0.622; M0.177; S0.020; _0.339)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 144 aa (-cTP 79)
Molecular Weight 15.98 kDA(-cTP 8.83)
PI 6.48(-cTP 4.36)

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1619Detail        [A. thaliana] m48

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19525416(leaf (wt and clpr4-1 mutant))
19292762(Ubiquitin-affinity seedling (10 d))
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data


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