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AT1G20693.1 high mobility group B2

Lab Annot.

high mobility group protein beta1 (HMGbeta1)
Mapman: 27.3.62 RNA.regulation of transcription.Nucleosome/chromatin assembly factor group

Curated Location

TAIR curated location: chromatin12653554

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G20693.3 11 Arabidopsis thaliana 2E-95 143 99 100 10 (8) C
AT1G20693.2 11 Arabidopsis thaliana 4E-94 142 98 100 9 (7) C
AT1G20696.1 11 Arabidopsis thaliana 5E-72 128 87 93 13 (12) C
Os09g37910.2 6 Oryza sativa 1E-39 130 54 68 2 (2) _
Os09g37910.3 6 Oryza sativa 1E-39 130 54 68 2 (2) _
Os09g37910.1 7 Oryza sativa 2E-39 130 54 68 4 (4) _
GRMZM2G066528_P02 3.21 Zea mays 1E-39 132 55 68 4 (4) _
Zm00001eb320870_P001 agpv5 Zea mays 1E-39 132 55 68 0 (0) _
v1_GRMZM2G066528_P02 4a53 Zea mays 1E-39 132 55 68 4 (4) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF236(1) DUF4337(1) HMG_box(1) HMG_box_2(1) NOA36(1) PH_4(1)
TargetP:	Chloroplast (Class 4 C0.622; M0.177; S0.020; _0.339)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	144 aa (-cTP 79)
Molecular Weight	15.98 kDA(-cTP 8.83)
PI	6.48(-cTP 4.36)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
1400	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1410	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.2	wild-type
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1619	Detail								[A. thaliana]		m48

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19525416(leaf (wt and clpr4-1 mutant))
19292762(Ubiquitin-affinity seedling (10 d))
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data