PPDB

PPDB	The Plant Proteome Database

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AT1G20580.1 Small nuclear ribonucleoprotein family protein

Lab Annot.

small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative
Mapman: 27.1 RNA.processing

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G76300.1 11 Arabidopsis thaliana 2E-66 132 81 87 9 (9) _
AT5G27720.1 11 Arabidopsis thaliana 1E-11 72 36 63 54 (21) _
AT4G02840.1 11 Arabidopsis thaliana 5E-08 92 27 52 54 (33) _
Os02g01250.1 7 Oryza sativa 7E-63 102 83 99 8 (8) _
Os03g13760.1 7 Oryza sativa 2E-62 102 82 99 8 (8) _
Os03g13760.2 7 Oryza sativa 1E-29 53 83 100 0 (0) _
Zm00001eb229320_P001 agpv5 Zea mays 2E-67 114 81 95 0 (0) _
v1_GRMZM2G115176_P03 4a53 Zea mays 3E-67 112 82 96 46 (46) _
GRMZM2G115176_P03 3.21 Zea mays 3E-67 112 82 96 39 (34) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	LSM(1)
TargetP:	Cytoplasm (Class 2 C0.039; M0.108; S0.145; _0.838)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	131 aa (-cTP 110)
Molecular Weight	14.24 kDA(-cTP )
PI	10.28(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2020	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2237	Detail								seedlings [A. thaliana]	total tissue	gfs9
2238	Detail								seedlings [A. thaliana]	total tissue	gfs9
2239	Detail								seedlings [A. thaliana]	total tissue	gfs9
2254	Detail								leaf [A. thaliana]	total seedlings	gfs9
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9
2256	Detail								leaf [A. thaliana]	total seedlings	gfs9
2257	Detail								leaf [A. thaliana]	total seedlings	gfs9
2258	Detail								leaf [A. thaliana]	total seedlings	gfs9
2259	Detail								leaf [A. thaliana]	total seedlings	gfs9
2296	Detail								[A. thaliana]		Clp C1 WT
2303	Detail								[A. thaliana]		Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data