PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G20480.1   AMP-dependent synthetase and ligase family protein

Lab Annot.
Mapman: 16.2 secondary metabolism.phenylpropanoids
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G20510.1 11Arabidopsis thaliana0547658062 (16)C
AT1G20500.1 11Arabidopsis thaliana055160750 (0)C
AT1G20510.2 11Arabidopsis thaliana0478658061 (15)C
Os03g04000.1 7Oryza sativa055756717 (7)_
Os01g67540.1 7Oryza sativa2E-14958343600 (0)C
Os03g05780.1 7Oryza sativa8E-12949843628 (8)C
Zm00001eb002570_P001 agpv5Zea mays055157710 (0)M
GRMZM2G096020_P01 3.21Zea mays0551577159 (0)M
v1_GRMZM2G096020_P01 4a53Zea mays055157711 (1)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: AMP-binding(1) AMP-binding_C(1)
TargetP: Cytoplasm (Class 1 C0.084; M0.120; S0.022; _0.946)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 2 TMs
TAT position:
Length 565 aa (-cTP 499)
Molecular Weight 61.44 kDA(-cTP )
PI 8.98(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

18931141(peroxisomes- high&low purity (cell culture))
18931141(peroxisomes-high purity (cell culture))
20706207(cell cycle interactome (cell culture))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help