PPDB

The Plant Proteome Database

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AT1G20370.1   Pseudouridine synthase family protein

Lab Annot. Pseudouridine synthase protein
Mapman: 29.1.30 protein.aa activation.pseudouridylate synthase
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G76120.1 11Arabidopsis thaliana046265770 (0)_
AT1G76120.2 11Arabidopsis thaliana2E-15835566770 (0)_
AT1G20290.1 11Arabidopsis thaliana4E-4912176840 (0)_
Os02g44810.1 7Oryza sativa054252650 (0)C
Os03g21980.1 7Oryza sativa8E-1613534530 (0)M
Os03g21980.2 7Oryza sativa7E-118741570 (0)_
Zm00001eb250100_P003 agpv5Zea mays049456700 (0)C
Zm00001eb250100_P004 agpv5Zea mays051154690 (0)C
v1_GRMZM2G112352_P01 4a53Zea mays051154690 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: PseudoU_synth_1(2)
TargetP: Cytoplasm (Class 1 C0.126; M0.048; S0.074; _0.943)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 549 aa (-cTP 465)
Molecular Weight 61.55 kDA(-cTP )
PI 5.22(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help