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AT1G20220.1 Alba DNA/RNA-binding protein

Lab Annot.

Alba DNA/RNA-binding protein
Mapman: 27.3.67 RNA.regulation of transcription.putative transcription regulator

Curated Location

TAIR curated location: cell wall (sensu Magnoliophyta)16287169

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G76010.1 11 Arabidopsis thaliana 1E-87 300 64 70 78 (59) _
AT1G76010.2 11 Arabidopsis thaliana 1E-87 300 64 70 0 (0) _
AT3G07030.2 11 Arabidopsis thaliana 2E-50 135 60 74 0 (0) _
Os09g37006.2 7 Oryza sativa 9E-68 148 69 82 18 (18) _
Os09g37006.1 7 Oryza sativa 1E-67 148 69 82 18 (18) _
Os04g34940.1 7 Oryza sativa 6E-65 144 68 82 20 (20) _
v1_GRMZM2G142111_P01 4a53 Zea mays 1E-64 144 66 83 15 (15) _
Zm00001eb082970_P002 agpv5 Zea mays 1E-64 144 66 83 0 (0) _
GRMZM2G142111_P01 3.21 Zea mays 1E-64 144 66 83 13 (13) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Alba(1) Extensin_2(1) Rpp20(1)
TargetP:	Cytoplasm (Class 2 C0.070; M0.166; S0.039; _0.867)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	315 aa (-cTP 280)
Molecular Weight	33.76 kDA(-cTP )
PI	9.92(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type
2224	Detail								leaf [A. thaliana]	total leaf tissue	Clp P3 strep
2237	Detail								seedlings [A. thaliana]	total tissue	gfs9
2238	Detail								seedlings [A. thaliana]	total tissue	gfs9
2239	Detail								seedlings [A. thaliana]	total tissue	gfs9
2240	Detail								seedlings [A. thaliana]	total tissue	gfs9
2241	Detail								seedlings [A. thaliana]	total tissue	gfs9
2246	Detail								seedlings [A. thaliana]	total tissue	gfs9
2248	Detail								seedlings [A. thaliana]	total tissue	wild-type
2249	Detail								seedlings [A. thaliana]	total tissue	gfs9
2250	Detail								seedlings [A. thaliana]	total tissue	atg5
2251	Detail								seedlings [A. thaliana]	total tissue	wild-type
2252	Detail								seedlings [A. thaliana]	total tissue	gfs9
2253	Detail								seedlings [A. thaliana]	total tissue	atg5
2254	Detail								leaf [A. thaliana]	total seedlings	gfs9
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9
2256	Detail								leaf [A. thaliana]	total seedlings	gfs9
2257	Detail								leaf [A. thaliana]	total seedlings	gfs9
2258	Detail								leaf [A. thaliana]	total seedlings	gfs9
2259	Detail								leaf [A. thaliana]	total seedlings	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19546170(mature pollen grains)
19376835(leaf phosphoproteins)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)

Comparative Proteomics Data