PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G19740.1   ATP-dependent protease La (LON) domain protein
Lab Annot. LON-domain protein 1 (LON-like1)
Mapman: 29.5.5.7* protein.degradation.serine protease SJ.S16
Curated Location plastid (Pubmed: 23198870 19224954 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G75460.1 11Arabidopsis thaliana5E-1392837884293 (103)C
AT1G18660.1 11Arabidopsis thaliana4E-19212294866 (13)_
AT1G18660.3 11Arabidopsis thaliana4E-19212294866 (13)_
Os07g32560.1 7Oryza sativa1E-98199718422 (22)C
Os03g29540.1 7Oryza sativa6E-4026839510 (0)C
Os03g29540.2 7Oryza sativa6E-4026839510 (0)C
Zm00001eb105790_P001 agpv5Zea mays9E-10219972830 (0)C
GRMZM2G048591_P01 3.21Zea mays2E-981997183101 (51)C
v1_GRMZM2G048591_P01 4a53Zea mays2E-98199718345 (45)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: bZIP_1(2) DUF3958(2) LON_substr_bdg(1)
TargetP: Chloroplast (Class 2 C0.862; M0.078; S0.006; _0.099)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 278 aa (-cTP 229)
Molecular Weight 31.37 kDA(-cTP 25.93)
PI 8.30(-cTP 5.39)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
180_181Detail       leaf [A. thaliana] chloroplast stromaclpr2-1
187_188Detail       leaf [A. thaliana] chloroplast stromaclpr2-1
272Detail       leaf [A. thaliana] chloroplast stromaclpr2-1
420Detail       leaf [A. thaliana] chloroplast stromaclpR1-stop (EMS)
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
618Detail       leaf [A. thaliana] chloroplast stromaclpr2-1
869Detail       leaf [A. thaliana] chloroplast stromawild-type
870Detail       leaf [A. thaliana] chloroplast stromawild-type
874Detail       leaf [A. thaliana] chloroplast stromawild-type
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1457Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1458Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 1)
1460Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 3)
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1526Detail       leaf [A. thaliana] co-IP GST-ClpS 100ug bait stromaclpc1 x clps (rep. 2)
1527Detail       leaf [A. thaliana] co-IP GST-ClpS 10ug bait stromaclpc1 x clps (rep. 2)
1949Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2001Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2114Detail       leaf [A. thaliana] Stroma stromawt
2115Detail       leaf [A. thaliana] Stroma stromacGep
2267Detail       leaf [A. thaliana] stroma Clp Clp C1 TRAP
2286Detail        [A. thaliana] Clp C1 WT
2287Detail        [A. thaliana] Clp C1 WT
2291Detail        [A. thaliana] Clp C1 TRAP
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help