PPDB

 The Plant Proteome Database

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AT1G19720.1   Pentatricopeptide repeat (PPR-like) superfamily protein
Lab Annot. pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein
Curated Location plastid (Pubmed: 23198870 )

TAIR curated location: nucleus & cytoplasm15610358
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G20230.1 11Arabidopsis thaliana2E-13579031520 (0)_
AT3G57430.1 11Arabidopsis thaliana3E-13585032510 (0)C
AT1G18485.1 11Arabidopsis thaliana5E-13289129501 (1)C
Os03g59264.1 7Oryza sativa068344660 (0)C
Os03g56400.1 7Oryza sativa9E-13678831500 (0)_
Os04g39410.1 7Oryza sativa2E-13395029480 (0)M
GRMZM2G143646_P01 3.21Zea mays0793436416 (16)C
v1_GRMZM2G143646_P01 4a53Zea mays0793436412 (12)C
Zm00001eb260770_P001 agpv5Zea mays079343640 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AEP1(5) ANAPC3(3) Clathrin(2) DUF1611(2) DYW_deaminase(1) PPR(15) PPR_1(14) PPR_
TargetP: Cytoplasm (Class 2 C0.149; M0.091; S0.096; _0.757)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon: 2 TMs
TAT position:
Length 894 aa (-cTP 875)
Molecular Weight 100.81 kDA(-cTP )
PI 8.20(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
303Detail       leaf [A. thaliana] chloroplast stromawild-type
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
871Detail       leaf [A. thaliana] chloroplast stromawild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1179Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1196Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1483Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 2)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1485Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1637Detail       leaf [A. thaliana] total leaf tissue stromaWild-type
1638Detail       leaf [A. thaliana] total leaf tissue stromaWild-type
1639Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
1640Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
20423899(chloroplast)
19423572(stroma chloroplast (wt and clpr2-1))

Comparative Proteomics Data
Expr*SourceTech.SpotPepSeqChargeState(z)AreaRatioAmbiguityTissueSample from
180_181clpr2-1 cICAT - exp1 / wt cICAT - exp1cICAT4LGMSSCLR + ICAT_l / LGMSSCLR + ICAT_h21.02 leaf [A. thaliana] chloroplast stroma

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