PPDB

PPDB	The Plant Proteome Database

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AT1G19520.1 pentatricopeptide (PPR) repeat-containing protein

Lab Annot.

NFD5 (NUCLEAR FUSION DEFECTIVE 5); transcription factor PPR
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G19520.2 11 Arabidopsis thaliana 0 370 100 100 2 (2) M
AT1G01970.1 11 Arabidopsis thaliana 2E-66 338 37 56 2 (1) M
AT1G63630.1 11 Arabidopsis thaliana 4E-26 252 25 48 0 (0) M
Os02g39820.1 7 Oryza sativa 4E-166 653 40 63 1 (1) M
Os07g46730.1 7 Oryza sativa 8E-52 350 32 53 0 (0) C
Os07g46730.2 7 Oryza sativa 8E-52 350 32 53 0 (0) C
Zm00001eb246850_P002 agpv5 Zea mays 7E-160 638 41 62 0 (0) M
Zm00001eb246850_P001 agpv5 Zea mays 7E-160 638 41 62 0 (0) M
v1_GRMZM2G035477_P01 4a53 Zea mays 7E-160 638 41 62 5 (5) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ATP13(2) Clathrin(4) DUF2767(2) Exog_C(3) PPR(8) PPR_1(5) PPR_2(6) PPR_3(7) PPR_
TargetP:	Mitochondria (Class 5 C0.561; M0.595; S0.045; _0.009)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	725 aa (-cTP 682)
Molecular Weight	82.54 kDA(-cTP )
PI	5.27(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
2238	Detail								seedlings [A. thaliana]	total tissue	gfs9
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9
2258	Detail								leaf [A. thaliana]	total seedlings	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

17407188(cotyledon)
19525416(leaf (wt and clpr4-1 mutant))
20706207(cell cycle interactome (cell culture))
21173025(root proteome)
21433285(Crude microsomes cell_cultures)

Comparative Proteomics Data