PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G19480.1   DNA glycosylase superfamily protein
Lab Annot. DNA glycosylase protein
Mapman: 28.2 DNA.repair
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G19480.2 11Arabidopsis thaliana03771001007 (7)C
AT1G75230.1 11Arabidopsis thaliana039870790 (0)C
AT1G75230.2 11Arabidopsis thaliana1E-17939370790 (0)C
Os05g50290.1 7Oryza sativa1E-10221567810 (0)C
Os05g49250.2 7Oryza sativa3E-6823350630 (0)C
Os05g49250.1 7Oryza sativa3E-6823350630 (0)C
Zm00001eb296790_P001 agpv5Zea mays2E-10522166790 (0)C
GRMZM2G114592_P01 3.21Zea mays2E-10522166790 (0)C
v1_GRMZM2G114592_P01 4a53Zea mays2E-10522166790 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: HhH-GPD(1)
TargetP: Chloroplast (Class 2 C0.853; M0.052; S0.018; _0.218)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 382 aa (-cTP 345)
Molecular Weight 41.90 kDA(-cTP 37.88)
PI 6.80(-cTP 8.68)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1113Detail        [A. thaliana] control for RARE-1 co-IP wild-type
1114Detail        [A. thaliana] RARE1 co-IP rare-1
1750Detail        [A. thaliana] Col-0
1751Detail        [A. thaliana] Col-0
1752Detail        [A. thaliana] ORMM1
1755Detail        [A. thaliana] ORMM1

* For details about the exprimental sources click here.

Published Proteomics Data

 21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help