PPDB

The Plant Proteome Database

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AT1G19120.1   Small nuclear ribonucleoprotein family protein

Lab Annot. small nuclear ribonucleoprotein, putative
Mapman: 27.1 RNA.processing
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G14080.2 11Arabidopsis thaliana1E-7112879890 (0)_
AT3G14080.1 11Arabidopsis thaliana1E-7112879890 (0)_
AT3G14080.4 11Arabidopsis thaliana3E-5810782880 (0)_
Os04g36810.1 7Oryza sativa3E-67127768718 (18)_
Os03g29740.1 7Oryza sativa2E-086940600 (0)_
GRMZM2G092429_P02 3.21Zea mays8E-68128768616 (16)_
v1_GRMZM2G092429_P02 4a53Zea mays8E-6812876867 (7)_
Zm00001eb081700_P001 agpv5Zea mays3E-6712876860 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Hfq(1) LSM(2)
TargetP: Cytoplasm (Class 3 C0.050; M0.078; S0.338; _0.844)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 128 aa (-cTP 83)
Molecular Weight 14.66 kDA(-cTP )
PI 4.81(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data


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