PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G18980.1   RmlC-like cupins superfamily protein

Lab Annot.
Mapman: 20.2.99 stress.abiotic.unspecified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G18970.1 11Arabidopsis thaliana7E-13622084911 (1)S
AT1G74820.1 11Arabidopsis thaliana2E-8322057710 (0)S
AT1G02335.1 11Arabidopsis thaliana5E-69203496711 (8)S
Os05g19670.1 7Oryza sativa3E-6919651710 (0)S
Os01g18170.1 7Oryza sativa6E-6919555720 (0)S
Os03g48780.1 7Oryza sativa1E-6819954680 (0)S
GRMZM2G122018_P01 3.21Zea mays2E-6922350650 (0)S
v1_GRMZM2G122018_P01 4a53Zea mays2E-6922350650 (0)S
Zm00001eb053700_P001 agpv5Zea mays2E-6922350650 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Baculo_11_kDa(1) Cupin_1(1) Cupin_2(1)
TargetP: Secreted (Class 1 C0.010; M0.020; S0.873; _0.026)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 220 aa (-cTP 182)
Molecular Weight 23.18 kDA(-cTP )
PI 8.91(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

18436743(specific to roots)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help