PPDB

PPDB	The Plant Proteome Database

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AT1G18660.1 zinc finger (C3HC4-type RING finger) family protein

Lab Annot.

zinc finger (C3HC4-type RING finger) protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G18660.3 11 Arabidopsis thaliana 0 486 100 100 66 (13) _
AT1G18660.2 11 Arabidopsis thaliana 0 486 100 100 66 (13) _
AT1G18660.4 11 Arabidopsis thaliana 0 476 98 98 66 (13) _
Os07g32560.1 7 Oryza sativa 6E-16 191 31 46 22 (22) C
Os12g16690.1 7 Oryza sativa 5E-13 77 40 63 0 (0) C
Os06g06760.3 7 Oryza sativa 1E-09 153 28 49 0 (0) _
GRMZM2G032821_P02 3.21 Zea mays 0 462 56 75 0 (0) _
Zm00001eb020460_P001 agpv5 Zea mays 0 462 56 75 0 (0) _
GRMZM2G032821_P01 3.21 Zea mays 0 462 56 75 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	LON_substr_bdg(1) Prok-RING_4(1) TPR_1(2) TPR_11(1) TPR_2(2) TPR_8(2) U-box(1) z
TargetP:	Cytoplasm (Class 2 C0.045; M0.155; S0.111; _0.883)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	486 aa (-cTP 462)
Molecular Weight	55.41 kDA(-cTP )
PI	5.73(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2286	Detail								[A. thaliana]		Clp C1 WT
2287	Detail								[A. thaliana]		Clp C1 WT
2288	Detail								[A. thaliana]		Clp C1 WT
2289	Detail								[A. thaliana]		Clp C1 TRAP
2290	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2297	Detail								[A. thaliana]		Clp C1 WT
2298	Detail								[A. thaliana]		Clp C1 WT
2299	Detail								[A. thaliana]		Clp C1 TRAP
2301	Detail								[A. thaliana]		Clp C1 TRAP
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)
21173025(root proteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data