PPDB

The Plant Proteome Database

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AT1G18600.1   RHOMBOID-like protein 12

Lab Annot. rhomboid protease 12 (AtRBL12) or AtPARL
Mapman: 29.5.5.10* protein.degradation.serine protease ST.S54
Curated Location mitochondria (Pubmed: 18543065 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G74130.1 11Arabidopsis thaliana5E-9234648620 (0)C
AT1G74140.5 11Arabidopsis thaliana6E-8534246600 (0)C
AT1G74140.1 11Arabidopsis thaliana1E-8334246590 (0)C
Os01g55740.1 7Oryza sativa2E-6921559730 (0)M
GRMZM2G073959_P01 3.21Zea mays1E-6125549630 (0)M
Zm00001eb370410_P001 agpv5Zea mays1E-6125549630 (0)M
v1_GRMZM2G073959_P01 4a53Zea mays1E-6125549630 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Rhomboid(1)
TargetP: Mitochondria (Class 5 C0.391; M0.452; S0.002; _0.074)
Predotar:
Subcel. Location:
TM-HMM prediction: 4 TMs
Aramemnon: 6 TMs
TAT position:
Length 336 aa (-cTP 257)
Molecular Weight 37.44 kDA(-cTP )
PI 11.29(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
94Detail       root [B. rapa] plastid stroma 
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help