PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G17810.1   beta-tonoplast intrinsic protein

Lab Annot.
Mapman: 34.19.2 transport.Major Intrinsic Proteins.TIP
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G73190.1 11Arabidopsis thaliana3E-15527084915 (5)_
AT4G01470.1 11Arabidopsis thaliana4E-10125658740 (0)_
AT2G36830.1 11Arabidopsis thaliana7E-1002615570433 (432)_
Os10g35050.1 7Oryza sativa5E-11426163800 (0)_
Os03g05290.1 7Oryza sativa3E-902615468126 (126)_
Os01g74450.1 7Oryza sativa3E-8625653706 (6)_
GRMZM2G103983_P01 3.21Zea mays1E-11726362790 (0)M
v1_GRMZM2G103983_P01 4a53Zea mays1E-11726362790 (0)M
Zm00001eb044880_P002 agpv5Zea mays1E-11726362790 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: MIP(1)
TargetP: Cytoplasm (Class 4 C0.011; M0.627; S0.014; _0.890)
Predotar:
Subcel. Location:
TM-HMM prediction: 6 TMs
Aramemnon: 6 TMs
TAT position:
Length 267 aa (-cTP 243)
Molecular Weight 28.18 kDA(-cTP )
PI 6.54(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

17293592(total seedlings û light and dark grown)
18436743(specific to roots)
19334764(plasma membrane (cell culture))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help