PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G17370.1 oligouridylate binding protein 1B

Lab Annot.

UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B); mRNA 3'-UTR binding
Mapman: 35.1 not assigned.no ontology

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G17370.2 11 Arabidopsis thaliana 0 419 99 99 14 (11) M
AT3G14100.1 11 Arabidopsis thaliana 0 400 81 90 21 (16) M
AT1G54080.1 11 Arabidopsis thaliana 0 409 75 86 13 (11) M
Os11g40510.1 7 Oryza sativa 0 390 70 79 0 (0) M
Os11g40510.2 7 Oryza sativa 0 386 70 79 0 (0) M
Os07g42380.1 7 Oryza sativa 0 388 68 80 0 (0) M
Zm00001eb166710_P001 agpv5 Zea mays 0 407 70 79 0 (0) M
GRMZM5G835213_P02 3.21 Zea mays 0 407 70 79 0 (0) M
Zm00001eb166710_P002 agpv5 Zea mays 0 398 70 79 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Cas_Cas2CT1978(3) PHM7_cyt(3) RRM_1(3) RRM_5(2) RRM_7(3) RRM_occluded(3)
TargetP:	Mitochondria (Class 2 C0.043; M0.742; S0.030; _0.075)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	419 aa (-cTP 404)
Molecular Weight	46.05 kDA(-cTP )
PI	7.21(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1717	Detail								[A. thaliana]
1718	Detail								[A. thaliana]
2182	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2183	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2184	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2185	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2287	Detail								[A. thaliana]		Clp C1 WT
2296	Detail								[A. thaliana]		Clp C1 WT
2302	Detail								[A. thaliana]		Clp C1 WT
2306	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19200160(flower-stage 12)
19376835(leaf phosphoproteins)
21166475(cytosolic-fractions-crude)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data