PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G17130.2   coiled-coil protein (DUF572)
Lab Annot. Family of unknown function (DUF572)
Mapman: 31.3 cell.cycle
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G17130.1 11Arabidopsis thaliana033897972 (2)_
AT2G32050.1 11Arabidopsis thaliana7E-7722456720 (0)_
AT3G43250.1 11Arabidopsis thaliana1E-7025850670 (0)_
Os01g40610.1 7Oryza sativa2E-11935057680 (0)_
Os01g40600.1 7Oryza sativa6E-6622051690 (0)_
Os02g21880.2 7Oryza sativa2E-1717828480 (0)_
GRMZM2G086236_P01 3.21Zea mays1E-11234956690 (0)_
Zm00001eb357410_P001 agpv5Zea mays1E-11234956690 (0)_
v1_GRMZM2G086236_P01 4a53Zea mays1E-11234956694 (4)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF2525(1) DUF3764(1) DUF572(1) PBP1_TM(2)
TargetP: Cytoplasm (Class 4 C0.123; M0.491; S0.026; _0.803)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 338 aa (-cTP 296)
Molecular Weight 38.48 kDA(-cTP )
PI 5.65(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1465Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 1)
1467Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

 19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help