PPDB

The Plant Proteome Database

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AT1G16820.2   vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein

Lab Annot. vacuolar ATP synthase catalytic subunit-related
Mapman: 34.1 transport.p- and v-ATPases
Curated Location vacuole-tonoplast (Pubmed: 21988472 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links PeptideAtlas   POGS   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G16820.1 11Arabidopsis thaliana2E-4062969813 (7)_
AT1G16820.3 11Arabidopsis thaliana7E-30481001000 (0)_
AT1G16820.4 11Arabidopsis thaliana7E-30481001000 (0)_
Os06g45120.1 7Oryza sativa2E-1439747972 (72)_
Os02g07870.1 7Oryza sativa4E-1439717932 (32)_
Os06g45120.2 7Oryza sativa1E-092979796 (6)_
v1_GRMZM2G421857_P04 4a53Zea mays1E-1539768287 (87)_
GRMZM2G421857_P04 3.21Zea mays1E-1539768288 (63)_
Zm00001eb206930_P001 agpv5Zea mays2E-153976820 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM:
TargetP: Cytoplasm (Class 5 C0.023; M0.343; S0.373; _0.407)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 66 aa (-cTP 30)
Molecular Weight 7.39 kDA(-cTP )
PI 6.81(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1345Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1450Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)

* For details about the exprimental sources click here.

Published Proteomics Data

21988472(vacuole (unfiltered data))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help