PPDB

The Plant Proteome Database

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AT1G16820.1   vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein

Lab Annot. vacuolar ATP synthase catalytic subunit-related
Mapman: 34.1 transport.p- and v-ATPases
Curated Location vacuole-tonoplast (Pubmed: 21988472 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G16820.2 11Arabidopsis thaliana3E-4062969812 (7)_
AT1G16820.3 11Arabidopsis thaliana1E-29481001000 (0)_
AT1G16820.4 11Arabidopsis thaliana1E-29481001000 (0)_
Os06g45120.1 7Oryza sativa1E-1338768172 (72)_
Os02g07870.1 7Oryza sativa2E-1338738132 (32)_
Os07g46680.1 7Oryza sativa2E-094858680 (0)_
v1_GRMZM2G421857_P04 4a53Zea mays8E-1538788487 (87)_
GRMZM2G421857_P04 3.21Zea mays8E-1538788474 (63)_
v1_GRMZM2G128877_P03 4a53Zea mays1E-1438788423 (23)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM:
TargetP: Cytoplasm (Class 2 C0.179; M0.048; S0.089; _0.889)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 93 aa (-cTP 74)
Molecular Weight 10.44 kDA(-cTP )
PI 6.01(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1345Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1450Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)

* For details about the exprimental sources click here.

Published Proteomics Data

15539469(vacuole)
17151019(vacuole - suspension cell)
17216043(leaf)
21988472(vacuole (unfiltered data))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help