PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G16445.1   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Lab Annot. rRNA methylase - likely plastid
Mapman: 27 RNA
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os05g43582.1 7Oryza sativa9E-9220760780 (0)C
Os05g43595.1 7Oryza sativa1E-1013029410 (0)_
Zm00001eb292510_P001 agpv5Zea mays1E-8820662780 (0)M
GRMZM2G142217_P01 3.21Zea mays3E-67168627713 (1)S
v1_GRMZM2G142217_P01 4a53Zea mays3E-6716862770 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: EMG1(1) Methyltransf_11(2) Methyltransf_25(1) Methyltransf_31(1) Methyltransf_32
TargetP: Chloroplast (Class 2 C0.826; M0.177; S0.045; _0.017)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 274 aa (-cTP 224)
Molecular Weight 30.15 kDA(-cTP 24.39)
PI 8.75(-cTP 6.57)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
339Detail       leaf [A. thaliana] chloroplast stromawild-type
874Detail       leaf [A. thaliana] chloroplast stromawild-type
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1481Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
1948Detail       leaf [A. thaliana] stroma ClpS stromaclpS

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help